IL_4V6V_044

3D structure

PDB id

4V6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracycline resistance protein Tet(O) bound to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

4V6V|1|AA|A|1227

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6V_044 not in the Motif Atlas

Geometric match to IL_8UO6_001

Geometric discrepancy: 0.3951

The information below is about IL_8UO6_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

4V6V|1|AA|G|953
4V6V|1|AA|G|954
*
4V6V|1|AA|C|1226
4V6V|1|AA|A|1227
4V6V|1|AA|C|1228

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain A3

Transfer RNA; tRNA

Chain AM

30S ribosomal protein S13

Chain AS

30S ribosomal protein S19