IL_4V6V_059

3D structure

PDB id

4V6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracycline resistance protein Tet(O) bound to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

4V6V|1|AA|C|1400, 4V6V|1|AA|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6V_059 not in the Motif Atlas

Homologous match to IL_5J7L_058

Geometric discrepancy: 0.2688

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

4V6V|1|AA|C|1399
4V6V|1|AA|C|1400
4V6V|1|AA|G|1401
*
4V6V|1|AA|C|1501
4V6V|1|AA|A|1502
4V6V|1|AA|A|1503
4V6V|1|AA|G|1504

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain A1

Tetracycline resistance protein TetO

Chain A2

mRNA

Chain A3

Transfer RNA; tRNA

Chain AK

30S ribosomal protein S11