IL_4V6V_060

3D structure

PDB id

4V6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracycline resistance protein Tet(O) bound to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

G(4OC)CC*G(UR3)AAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6V_060 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.2363

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V6V|1|AA|G|1401
4V6V|1|AA|4OC|1402
4V6V|1|AA|C|1403
4V6V|1|AA|C|1404
*
4V6V|1|AA|G|1497
4V6V|1|AA|UR3|1498
4V6V|1|AA|A|1499
4V6V|1|AA|A|1500
4V6V|1|AA|C|1501

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain A1

Tetracycline resistance protein TetO

Chain A2

mRNA

Chain A3

Transfer RNA; tRNA

Chain AL

30S ribosomal protein S12

Chain BA

Large subunit ribosomal RNA; LSU rRNA