IL_4V6V_067

3D structure

PDB id

4V6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracycline resistance protein Tet(O) bound to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

GUAG*CUGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6V_067 not in the Motif Atlas

Geometric match to IL_5UNE_005

Geometric discrepancy: 0.2783

The information below is about IL_5UNE_005

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4V6V|1|AA|G|1511
4V6V|1|AA|U|1512
4V6V|1|AA|A|1513
4V6V|1|AA|G|1514
*
4V6V|1|AA|C|1521
4V6V|1|AA|U|1522
4V6V|1|AA|G|1523
4V6V|1|AA|C|1524

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AK

30S ribosomal protein S11

Chain AU

30S ribosomal protein S21

Chain BA

Large subunit ribosomal RNA; LSU rRNA