3D structure

PDB id
4V6V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Tetracycline resistance protein Tet(O) bound to the ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
9.8 Å

Loop

Sequence
CCAGUAG*CGAACG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6V_074 not in the Motif Atlas
Homologous match to IL_5J7L_251
Geometric discrepancy: 0.1387
The information below is about IL_5J7L_251
Detailed Annotation
7x6 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_26307.2
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
9

Unit IDs

4V6V|1|BA|C|239
4V6V|1|BA|C|240
4V6V|1|BA|A|241
4V6V|1|BA|G|242
4V6V|1|BA|U|243
4V6V|1|BA|A|244
4V6V|1|BA|G|245
*
4V6V|1|BA|C|253
4V6V|1|BA|G|254
4V6V|1|BA|A|255
4V6V|1|BA|A|256
4V6V|1|BA|C|257
4V6V|1|BA|G|258

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain B8
50S ribosomal protein L35
Chain BP
50S ribosomal protein L15

Coloring options:


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