IL_4V6V_087

3D structure

PDB id

4V6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracycline resistance protein Tet(O) bound to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

4V6V|1|BA|G|776, 4V6V|1|BA|A|788, 4V6V|1|BA|A|789, 4V6V|1|BA|U|790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6V_087 not in the Motif Atlas

Geometric match to IL_7A0S_021

Geometric discrepancy: 0.2389

The information below is about IL_7A0S_021

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

4V6V|1|BA|G|775
4V6V|1|BA|G|776
4V6V|1|BA|G|777
*
4V6V|1|BA|C|787
4V6V|1|BA|A|788
4V6V|1|BA|A|789
4V6V|1|BA|U|790
4V6V|1|BA|C|791

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B7

50S ribosomal protein L34

Chain BD

50S ribosomal protein L2

Chain BW

50S ribosomal protein L22