IL_4V6V_092

3D structure

PDB id

4V6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracycline resistance protein Tet(O) bound to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

GA*UGC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6V_092 not in the Motif Atlas

Homologous match to IL_4WF9_032

Geometric discrepancy: 0.248

The information below is about IL_4WF9_032

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

4V6V|1|BA|G|862
4V6V|1|BA|A|863
*
4V6V|1|BA|U|913
4V6V|1|BA|G|914
4V6V|1|BA|C|915

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B0

50S ribosomal protein L27

Chain BQ

50S ribosomal protein L16

Chain BZ

50S ribosomal protein L25

Chain Ba

5S ribosomal RNA; 5S rRNA