IL_4V6V_094

3D structure

PDB id

4V6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracycline resistance protein Tet(O) bound to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

GUUU*AUGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6V_094 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.3034

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4V6V|1|BA|G|869
4V6V|1|BA|U|870
4V6V|1|BA|U|871
4V6V|1|BA|U|872
*
4V6V|1|BA|A|905
4V6V|1|BA|U|906
4V6V|1|BA|G|907
4V6V|1|BA|C|908

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BQ

50S ribosomal protein L16