IL_4V6V_100

3D structure

PDB id

4V6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracycline resistance protein Tet(O) bound to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6V_100 not in the Motif Atlas

Homologous match to IL_5J7L_278

Geometric discrepancy: 0.1408

The information below is about IL_5J7L_278

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

4V6V|1|BA|U|1004
4V6V|1|BA|C|1005
4V6V|1|BA|C|1006
4V6V|1|BA|C|1007
4V6V|1|BA|A|1008
4V6V|1|BA|A|1009
4V6V|1|BA|A|1010
4V6V|1|BA|G|1011
*
4V6V|1|BA|C|1150
4V6V|1|BA|A|1151

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BN

50S ribosomal protein L13

Chain BU

50S ribosomal protein L20