IL_4V6V_106

3D structure

PDB id

4V6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracycline resistance protein Tet(O) bound to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

CCCAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

4V6V|1|BA|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6V_106 not in the Motif Atlas

Homologous match to IL_5J7L_284

Geometric discrepancy: 0.2056

The information below is about IL_5J7L_284

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.2

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

4V6V|1|BA|C|1043
4V6V|1|BA|C|1044
4V6V|1|BA|C|1045
4V6V|1|BA|A|1046
4V6V|1|BA|G|1047
4V6V|1|BA|A|1048
4V6V|1|BA|C|1049
4V6V|1|BA|A|1050
4V6V|1|BA|G|1051
*
4V6V|1|BA|U|1108
4V6V|1|BA|C|1109
4V6V|1|BA|G|1110
4V6V|1|BA|A|1111
4V6V|1|BA|G|1112

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BH

50S ribosomal protein L6

Chain BJ

50S ribosomal protein L10