IL_4V6X_001

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

4V6X|1|A8|C|150

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_001 not in the Motif Atlas

Homologous match to IL_8C3A_002

Geometric discrepancy: 0.2434

The information below is about IL_8C3A_002

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

4V6X|1|A5|C|6
4V6X|1|A5|C|7
*
4V6X|1|A8|G|149
4V6X|1|A8|C|150
4V6X|1|A8|G|151

Current chains

Chain A5

28S ribosomal RNA

Chain A8

5.8S ribosomal RNA

Nearby chains

Chain CG

60S ribosomal protein L7a

Chain CN

60S ribosomal protein L15

Chain CX

60S ribosomal protein L23a