IL_4V6X_006

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

4V6X|1|A5|G|119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_006 not in the Motif Atlas

Geometric match to IL_1NBS_009

Geometric discrepancy: 0.2958

The information below is about IL_1NBS_009

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

4V6X|1|A5|C|118
4V6X|1|A5|G|119
4V6X|1|A5|A|120
4V6X|1|A5|A|121
*
4V6X|1|A5|U|152
4V6X|1|A5|G|153

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CG

60S ribosomal protein L7a

Chain CN

60S ribosomal protein L15

Chain Ch

60S ribosomal protein L35