IL_4V6X_028

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GGC*GU

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_028 not in the Motif Atlas

Geometric match to IL_5J7L_032

Geometric discrepancy: 0.282

The information below is about IL_5J7L_032

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

4V6X|1|A5|G|504
4V6X|1|A5|G|505
4V6X|1|A5|C|506
*
4V6X|1|A5|G|652
4V6X|1|A5|U|653

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CC

60S ribosomal protein L4

Chain CQ

60S ribosomal protein L18

Chain Ca

60S ribosomal protein L27a