IL_4V6X_039

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

UCCC*GGGGUCUCCUCGU*G

Length

18 nucleotides

Bulged bases

4V6X|1|A5|G|1052, 4V6X|1|A5|G|1054, 4V6X|1|A5|U|1055, 4V6X|1|A5|C|1056, 4V6X|1|A5|U|1057, 4V6X|1|A5|C|1058, 4V6X|1|A5|C|1059, 4V6X|1|A5|U|1060, 4V6X|1|A5|C|1061, 4V6X|1|A5|G|1062, 4V6X|1|A5|U|1063

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_039 not in the Motif Atlas

Geometric match to IL_6AZ4_001

Geometric discrepancy: 0.3459

The information below is about IL_6AZ4_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69145.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

5

Unit IDs

4V6X|1|A5|U|989
4V6X|1|A5|C|990
4V6X|1|A5|C|991
4V6X|1|A5|C|992
*
4V6X|1|A5|G|1051
4V6X|1|A5|G|1052
4V6X|1|A5|G|1064
4V6X|1|A5|G|1054
4V6X|1|A5|U|1055
4V6X|1|A5|C|1056
4V6X|1|A5|U|1057
4V6X|1|A5|C|1058
4V6X|1|A5|C|1059
4V6X|1|A5|U|1060
4V6X|1|A5|C|1061
4V6X|1|A5|G|1062
4V6X|1|A5|U|1063
*
4V6X|1|A5|G|1064

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CE

60S ribosomal protein L6