IL_4V6X_046

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GGA*UGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_046 not in the Motif Atlas

Geometric match to IL_3NJ7_004

Geometric discrepancy: 0.1967

The information below is about IL_3NJ7_004

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

4V6X|1|A5|G|1173
4V6X|1|A5|G|1174
4V6X|1|A5|A|1175
*
4V6X|1|A5|U|1186
4V6X|1|A5|G|1187
4V6X|1|A5|C|1188

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CD

60S ribosomal protein L5