IL_4V6X_052

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CGC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_052 not in the Motif Atlas

Geometric match to IL_5J7L_249

Geometric discrepancy: 0.2055

The information below is about IL_5J7L_249

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

4V6X|1|A5|C|1474
4V6X|1|A5|G|1475
4V6X|1|A5|C|1476
*
4V6X|1|A5|G|1489
4V6X|1|A5|G|1490

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CL

60S ribosomal protein L13

Chain Ca

60S ribosomal protein L27a

Chain Co

60S ribosomal protein L36a