IL_4V6X_060

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GCUG*CUAGU

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_060 not in the Motif Atlas

Geometric match to IL_8C3A_009

Geometric discrepancy: 0.3906

The information below is about IL_8C3A_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90170.1

Basepair signature

cWW-L-R-L-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V6X|1|A5|G|1685
4V6X|1|A5|C|1686
4V6X|1|A5|U|1687
4V6X|1|A5|G|1688
*
4V6X|1|A5|C|1848
4V6X|1|A5|U|1849
4V6X|1|A5|A|1850
4V6X|1|A5|G|1851
4V6X|1|A5|U|1852

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CL

60S ribosomal protein L13

Chain CQ

60S ribosomal protein L18

Chain CT

60S ribosomal protein L21

Chain Ca

60S ribosomal protein L27a

Chain Cb

60S ribosomal protein L29