IL_4V6X_061
3D structure
- PDB id
- 4V6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- CUCGCAGCACGC*GCGCACCCCCGCCACG*CGC*G
- Length
- 32 nucleotides
- Bulged bases
- 4V6X|1|A5|C|1698, 4V6X|1|A5|A|1699, 4V6X|1|A5|G|1700, 4V6X|1|A5|C|1718, 4V6X|1|A5|A|1719, 4V6X|1|A5|C|1841, 4V6X|1|A5|C|1709, 4V6X|1|A5|A|1710, 4V6X|1|A5|C|1711, 4V6X|1|A5|C|1712, 4V6X|1|A5|C|1713, 4V6X|1|A5|C|1714, 4V6X|1|A5|C|1715, 4V6X|1|A5|G|1716, 4V6X|1|A5|C|1717, 4V6X|1|A5|C|1718, 4V6X|1|A5|A|1719, 4V6X|1|A5|C|1841
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6X_061 not in the Motif Atlas
- Homologous match to IL_5TBW_036
- Geometric discrepancy: 0.5752
- The information below is about IL_5TBW_036
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_42230.1
- Basepair signature
- cWW-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
4V6X|1|A5|C|1694
4V6X|1|A5|U|1695
4V6X|1|A5|C|1696
4V6X|1|A5|G|1697
4V6X|1|A5|C|1698
4V6X|1|A5|A|1699
4V6X|1|A5|G|1700
4V6X|1|A5|C|1718
4V6X|1|A5|A|1719
4V6X|1|A5|C|1720
4V6X|1|A5|G|1721
4V6X|1|A5|C|1722
*
4V6X|1|A5|G|1840
4V6X|1|A5|C|1841
4V6X|1|A5|G|1842
4V6X|1|A5|C|1709
4V6X|1|A5|A|1710
4V6X|1|A5|C|1711
4V6X|1|A5|C|1712
4V6X|1|A5|C|1713
4V6X|1|A5|C|1714
4V6X|1|A5|C|1715
4V6X|1|A5|G|1716
4V6X|1|A5|C|1717
4V6X|1|A5|C|1718
4V6X|1|A5|A|1719
4V6X|1|A5|C|1720
4V6X|1|A5|G|1721
*
4V6X|1|A5|C|1722
4V6X|1|A5|G|1840
4V6X|1|A5|C|1841
*
4V6X|1|A5|G|1842
Current chains
- Chain A5
- 28S ribosomal RNA
Nearby chains
- Chain CC
- 60S ribosomal protein L4
- Chain CF
- 60S ribosomal protein L7
- Chain CQ
- 60S ribosomal protein L18
- Chain CT
- 60S ribosomal protein L21
- Chain Cb
- 60S ribosomal protein L29
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