IL_4V6X_065

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GAUUA*UUCUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_065 not in the Motif Atlas

Homologous match to IL_8C3A_044

Geometric discrepancy: 0.1799

The information below is about IL_8C3A_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

4V6X|1|A5|G|1745
4V6X|1|A5|A|1746
4V6X|1|A5|U|1747
4V6X|1|A5|U|1748
4V6X|1|A5|A|1749
*
4V6X|1|A5|U|1781
4V6X|1|A5|U|1782
4V6X|1|A5|C|1783
4V6X|1|A5|U|1784
4V6X|1|A5|C|1785

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain A7

5S ribosomal RNA; 5S rRNA

Chain CD

60S ribosomal protein L5

Chain CI

60S ribosomal protein L10-like