IL_4V6X_077

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GACCCCAGAAAA*UGAAAAUGGAUGGCGC

Length

28 nucleotides

Bulged bases

4V6X|1|A5|C|1935, 4V6X|1|A5|A|2041

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_077 not in the Motif Atlas

Geometric match to IL_5TBW_052

Geometric discrepancy: 0.1842

The information below is about IL_5TBW_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_53762.1

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

4V6X|1|A5|G|1933
4V6X|1|A5|A|1934
4V6X|1|A5|C|1935
4V6X|1|A5|C|1936
4V6X|1|A5|C|1937
4V6X|1|A5|C|1938
4V6X|1|A5|A|1939
4V6X|1|A5|G|1940
4V6X|1|A5|A|1941
4V6X|1|A5|A|1942
4V6X|1|A5|A|1943
4V6X|1|A5|A|1944
*
4V6X|1|A5|U|2038
4V6X|1|A5|G|2039
4V6X|1|A5|A|2040
4V6X|1|A5|A|2041
4V6X|1|A5|A|2042
4V6X|1|A5|A|2043
4V6X|1|A5|U|2044
4V6X|1|A5|G|2045
4V6X|1|A5|G|2046
4V6X|1|A5|A|2047
4V6X|1|A5|U|2048
4V6X|1|A5|G|2049
4V6X|1|A5|G|2050
4V6X|1|A5|C|2051
4V6X|1|A5|G|2052
4V6X|1|A5|C|2053

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain A7

5S ribosomal RNA; 5S rRNA

Chain CB

60S ribosomal protein L3

Chain CF

60S ribosomal protein L7

Chain CI

60S ribosomal protein L10-like

Chain CO

60S ribosomal protein L13a

Chain Cf

60S ribosomal protein L35a

Chain Cm

60S ribosomal protein L40