IL_4V6X_098

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GCGC*GGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_098 not in the Motif Atlas

Geometric match to IL_4P3T_002

Geometric discrepancy: 0.3455

The information below is about IL_4P3T_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01472.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

4V6X|1|A5|G|2650
4V6X|1|A5|C|2651
4V6X|1|A5|G|2652
4V6X|1|A5|C|2653
*
4V6X|1|A5|G|2681
4V6X|1|A5|G|2682
4V6X|1|A5|C|2683

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain Cc

60S ribosomal protein L30

Chain Cg

60S ribosomal protein L34

Chain Cp

60S ribosomal protein L37a