IL_4V6X_105

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

4V6X|1|A5|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_105 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.1104

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4V6X|1|A5|C|2867
4V6X|1|A5|G|2868
4V6X|1|A5|U|2869
4V6X|1|A5|A|2870
4V6X|1|A5|A|2871
4V6X|1|A5|C|2872
*
4V6X|1|A5|G|2877
4V6X|1|A5|G|2878
4V6X|1|A5|A|2879
4V6X|1|A5|U|2880
4V6X|1|A5|A|2881
4V6X|1|A5|A|2882
4V6X|1|A5|G|2883

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain B2

Small subunit ribosomal RNA; SSU rRNA

Chain Cn

60S ribosomal protein L41

Chain Cp

60S ribosomal protein L37a