IL_4V6X_109

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

4V6X|1|A5|A|3663, 4V6X|1|A5|U|3679, 4V6X|1|A5|C|3683

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_109 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.1605

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

4V6X|1|A5|C|3660
4V6X|1|A5|G|3661
4V6X|1|A5|A|3662
4V6X|1|A5|A|3663
4V6X|1|A5|G|3664
4V6X|1|A5|G|3665
*
4V6X|1|A5|U|3677
4V6X|1|A5|G|3678
4V6X|1|A5|U|3679
4V6X|1|A5|U|3680
4V6X|1|A5|G|3681
4V6X|1|A5|A|3682
4V6X|1|A5|C|3683
4V6X|1|A5|G|3684

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain B2

Small subunit ribosomal RNA; SSU rRNA

Chain CA

60S ribosomal protein L8

Chain Cp

60S ribosomal protein L37a