IL_4V6X_113

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

4V6X|1|A5|U|3713

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_113 not in the Motif Atlas

Homologous match to IL_5TBW_087

Geometric discrepancy: 0.529

The information below is about IL_5TBW_087

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.5

Basepair signature

cWW-cHS-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V6X|1|A5|G|3710
4V6X|1|A5|A|3711
4V6X|1|A5|A|3712
4V6X|1|A5|U|3713
4V6X|1|A5|G|3714
*
4V6X|1|A5|C|3739
4V6X|1|A5|G|3740
4V6X|1|A5|C|3741

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain B2

Small subunit ribosomal RNA; SSU rRNA

Chain BC

Transfer RNA; tRNA

Chain CA

60S ribosomal protein L8