IL_4V6X_116
3D structure
- PDB id
- 4V6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- CCAAAUGCCUCG*CGCG
- Length
- 16 nucleotides
- Bulged bases
- 4V6X|1|A5|A|3785, 4V6X|1|A5|C|3791, 4V6X|1|A5|C|3810
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6X_116 not in the Motif Atlas
- Geometric match to IL_5TBW_090
- Geometric discrepancy: 0.1844
- The information below is about IL_5TBW_090
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_66080.1
- Basepair signature
- cWW-cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
4V6X|1|A5|C|3781
4V6X|1|A5|C|3782
4V6X|1|A5|A|3783
4V6X|1|A5|A|3784
4V6X|1|A5|A|3785
4V6X|1|A5|U|3786
4V6X|1|A5|G|3787
4V6X|1|A5|C|3788
4V6X|1|A5|C|3789
4V6X|1|A5|U|3790
4V6X|1|A5|C|3791
4V6X|1|A5|G|3792
*
4V6X|1|A5|C|3808
4V6X|1|A5|G|3809
4V6X|1|A5|C|3810
4V6X|1|A5|G|3811
Current chains
- Chain A5
- 28S ribosomal RNA
Nearby chains
- Chain B2
- Small subunit ribosomal RNA; SSU rRNA
- Chain Cn
- 60S ribosomal protein L41
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