IL_4V6X_123

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

UGA*UGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_123 not in the Motif Atlas

Geometric match to IL_1NBS_006

Geometric discrepancy: 0.2549

The information below is about IL_1NBS_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

4V6X|1|A5|U|3950
4V6X|1|A5|G|3951
4V6X|1|A5|A|3952
*
4V6X|1|A5|U|4060
4V6X|1|A5|G|4061
4V6X|1|A5|A|4062

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain AB

40S ribosomal protein S3a

Chain Cz

60S ribosomal protein L10a