IL_4V6X_135

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

4V6X|1|A5|U|4437

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_135 not in the Motif Atlas

Homologous match to IL_5TBW_105

Geometric discrepancy: 0.1275

The information below is about IL_5TBW_105

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

4V6X|1|A5|G|4405
4V6X|1|A5|U|4406
4V6X|1|A5|G|4407
*
4V6X|1|A5|U|4435
4V6X|1|A5|U|4436
4V6X|1|A5|U|4437
4V6X|1|A5|U|4438
4V6X|1|A5|U|4439

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CB

60S ribosomal protein L3

Chain CI

60S ribosomal protein L10-like