IL_4V6X_149

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

UGUAUG*CGAAG

Length

11 nucleotides

Bulged bases

4V6X|1|A5|U|4634, 4V6X|1|A5|U|4636

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_149 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.1897

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

4V6X|1|A5|U|4632
4V6X|1|A5|G|4633
4V6X|1|A5|U|4634
4V6X|1|A5|A|4635
4V6X|1|A5|U|4636
4V6X|1|A5|G|4637
*
4V6X|1|A5|C|4662
4V6X|1|A5|G|4663
4V6X|1|A5|A|4664
4V6X|1|A5|A|4665
4V6X|1|A5|G|4666

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CB

60S ribosomal protein L3

Chain CW

60S ribosomal protein L24

Chain Cd

60S ribosomal protein L31