IL_4V6X_157

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

UCCU*GUCA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_157 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.3417

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

4V6X|1|A5|U|4885
4V6X|1|A5|C|4886
4V6X|1|A5|C|4887
4V6X|1|A5|U|4888
*
4V6X|1|A5|G|4931
4V6X|1|A5|U|4932
4V6X|1|A5|C|4933
4V6X|1|A5|A|4934

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CE

60S ribosomal protein L6