IL_4V6X_183

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

UAU*ACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_183 not in the Motif Atlas

Geometric match to IL_4V9K_064

Geometric discrepancy: 0.2718

The information below is about IL_4V9K_064

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

4V6X|1|B2|U|110
4V6X|1|B2|A|111
4V6X|1|B2|U|112
*
4V6X|1|B2|A|349
4V6X|1|B2|C|350
4V6X|1|B2|G|351

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AE

40S ribosomal protein S4, X isoform

Chain AI

40S ribosomal protein S8

Chain AL

40S ribosomal protein S11