IL_4V6X_186
3D structure
- PDB id
- 4V6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- GGAUAAC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 4V6X|1|B2|U|172
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6X_186 not in the Motif Atlas
- Homologous match to IL_4V88_394
- Geometric discrepancy: 0.1789
- The information below is about IL_4V88_394
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.3
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
4V6X|1|B2|G|145
4V6X|1|B2|G|146
4V6X|1|B2|A|147
4V6X|1|B2|U|148
4V6X|1|B2|A|149
4V6X|1|B2|A|150
4V6X|1|B2|C|151
*
4V6X|1|B2|G|167
4V6X|1|B2|C|168
4V6X|1|B2|U|169
4V6X|1|B2|A|170
4V6X|1|B2|A|171
4V6X|1|B2|U|172
4V6X|1|B2|A|173
4V6X|1|B2|C|174
Current chains
- Chain B2
- 18S ribosomal RNA
Nearby chains
- Chain AG
- 40S ribosomal protein S6
- Chain AY
- 40S ribosomal protein S24
- Chain CW
- 60S ribosomal protein L24
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