IL_4V6X_201

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GG*CCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_201 not in the Motif Atlas

Geometric match to IL_5J7L_044

Geometric discrepancy: 0.3379

The information below is about IL_5J7L_044

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

4V6X|1|B2|G|534
4V6X|1|B2|G|535
*
4V6X|1|B2|C|548
4V6X|1|B2|C|549
4V6X|1|B2|C|550

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AJ

40S ribosomal protein S9

Chain Ae

40S ribosomal protein S30