IL_4V6X_206

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CAG*CCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_206 not in the Motif Atlas

Geometric match to IL_4KNQ_003

Geometric discrepancy: 0.1748

The information below is about IL_4KNQ_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

4V6X|1|B2|C|663
4V6X|1|B2|A|664
4V6X|1|B2|G|665
*
4V6X|1|B2|C|1162
4V6X|1|B2|C|1163
4V6X|1|B2|G|1164

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AC

40S ribosomal protein S2

Chain AX

40S ribosomal protein S23