IL_4V6X_215

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_215 not in the Motif Atlas

Homologous match to IL_4V88_423

Geometric discrepancy: 0.2407

The information below is about IL_4V88_423

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

19

Unit IDs

4V6X|1|B2|A|802
4V6X|1|B2|C|803
*
4V6X|1|B2|G|860
4V6X|1|B2|A|861
4V6X|1|B2|A|862
4V6X|1|B2|U|863

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AH

40S ribosomal protein S7

Chain AL

40S ribosomal protein S11

Chain AW

40S ribosomal protein S15a

Chain AX

40S ribosomal protein S23