IL_4V6X_216
3D structure
- PDB id
- 4V6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- UUUG*CUAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6X_216 not in the Motif Atlas
- Geometric match to IL_7A0S_040
- Geometric discrepancy: 0.1927
- The information below is about IL_7A0S_040
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71194.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
4V6X|1|B2|U|804
4V6X|1|B2|U|805
4V6X|1|B2|U|806
4V6X|1|B2|G|807
*
4V6X|1|B2|C|856
4V6X|1|B2|U|857
4V6X|1|B2|A|858
4V6X|1|B2|G|859
Current chains
- Chain B2
- 18S ribosomal RNA
Nearby chains
- Chain AE
- 40S ribosomal protein S4, X isoform
- Chain AH
- 40S ribosomal protein S7
- Chain AL
- 40S ribosomal protein S11
- Chain AW
- 40S ribosomal protein S15a
Coloring options: