IL_4V6X_224

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

4V6X|1|B2|G|970

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_224 not in the Motif Atlas

Homologous match to IL_4V88_434

Geometric discrepancy: 0.1947

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

4V6X|1|B2|G|952
4V6X|1|B2|C|953
4V6X|1|B2|U|954
4V6X|1|B2|A|955
4V6X|1|B2|G|956
*
4V6X|1|B2|C|967
4V6X|1|B2|U|968
4V6X|1|B2|U|969
4V6X|1|B2|G|970
4V6X|1|B2|G|971
4V6X|1|B2|A|972
4V6X|1|B2|C|973
4V6X|1|B2|C|974

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain A5

Large subunit ribosomal RNA; LSU rRNA

Chain AB

40S ribosomal protein S3a

Chain AO

40S ribosomal protein S14