IL_4V6X_229
3D structure
- PDB id
- 4V6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- UGC*GGG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6X_229 not in the Motif Atlas
- Geometric match to IL_1RPU_001
- Geometric discrepancy: 0.2733
- The information below is about IL_1RPU_001
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 214
Unit IDs
4V6X|1|B2|U|1101
4V6X|1|B2|G|1102
4V6X|1|B2|C|1103
*
4V6X|1|B2|G|1129
4V6X|1|B2|G|1130
4V6X|1|B2|G|1131
Current chains
- Chain B2
- 18S ribosomal RNA
Nearby chains
- Chain AB
- 40S ribosomal protein S3a
- Chain AN
- 40S ribosomal protein S13
- Chain Aa
- 40S ribosomal protein S26
- Chain Ab
- 40S ribosomal protein S27
Coloring options: