IL_4V6X_259

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

4V6X|1|B2|C|1701, 4V6X|1|B2|A|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_259 not in the Motif Atlas

Homologous match to IL_4V88_463

Geometric discrepancy: 0.2105

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

4V6X|1|B2|C|1700
4V6X|1|B2|C|1701
4V6X|1|B2|G|1702
*
4V6X|1|B2|C|1833
4V6X|1|B2|A|1834
4V6X|1|B2|A|1835
4V6X|1|B2|G|1836

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain Aa

40S ribosomal protein S26

Chain Ah

Plasminogen activator inhibitor 1 RNA-binding protein

Chain BC

Transfer RNA; tRNA