IL_4V6X_260

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_260 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1802

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V6X|1|B2|G|1702
4V6X|1|B2|C|1703
4V6X|1|B2|C|1704
4V6X|1|B2|C|1705
*
4V6X|1|B2|G|1829
4V6X|1|B2|U|1830
4V6X|1|B2|A|1831
4V6X|1|B2|A|1832
4V6X|1|B2|C|1833

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain A5

Large subunit ribosomal RNA; LSU rRNA

Chain Ah

Plasminogen activator inhibitor 1 RNA-binding protein

Chain Cn

60S ribosomal protein L41