IL_4V6X_262
3D structure
- PDB id
- 4V6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- 4V6X|1|B2|A|1825
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6X_262 not in the Motif Atlas
- Geometric match to IL_6AZ4_001
- Geometric discrepancy: 0.2983
- The information below is about IL_6AZ4_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_69145.1
- Basepair signature
- cWW-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
4V6X|1|B2|C|1708
4V6X|1|B2|G|1709
4V6X|1|B2|C|1710
4V6X|1|B2|U|1711
*
4V6X|1|B2|A|1822
4V6X|1|B2|A|1823
4V6X|1|B2|A|1824
4V6X|1|B2|A|1825
4V6X|1|B2|G|1826
Current chains
- Chain B2
- 18S ribosomal RNA
Nearby chains
- Chain A5
- Large subunit ribosomal RNA; LSU rRNA
- Chain AX
- 40S ribosomal protein S23
- Chain Ae
- 40S ribosomal protein S30
- Chain Az
- Elongation factor 2
- Chain Cn
- 60S ribosomal protein L41
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