IL_4V6X_268

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CCUC*GACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_268 not in the Motif Atlas

Geometric match to IL_4V88_473

Geometric discrepancy: 0.1473

The information below is about IL_4V88_473

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

4V6X|1|B2|C|1739
4V6X|1|B2|C|1740
4V6X|1|B2|U|1741
4V6X|1|B2|C|1742
*
4V6X|1|B2|G|1792
4V6X|1|B2|A|1793
4V6X|1|B2|C|1794
4V6X|1|B2|G|1795

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AG

40S ribosomal protein S6

Chain AI

40S ribosomal protein S8

Chain CW

60S ribosomal protein L24