IL_4V6X_269

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_269 not in the Motif Atlas

Homologous match to IL_4V88_474

Geometric discrepancy: 0.2126

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

4V6X|1|B2|C|1742
4V6X|1|B2|G|1743
4V6X|1|B2|G|1744
4V6X|1|B2|A|1745
4V6X|1|B2|U|1746
*
4V6X|1|B2|A|1788
4V6X|1|B2|G|1789
4V6X|1|B2|A|1790
4V6X|1|B2|A|1791
4V6X|1|B2|G|1792

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AG

40S ribosomal protein S6

Chain AI

40S ribosomal protein S8

Chain CW

60S ribosomal protein L24