IL_4V6X_271

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_271 not in the Motif Atlas

Geometric match to IL_4C7O_002

Geometric discrepancy: 0.2568

The information below is about IL_4C7O_002

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

4V6X|1|B2|C|1751
4V6X|1|B2|C|1752
*
4V6X|1|B2|G|1780
4V6X|1|B2|A|1781
4V6X|1|B2|G|1782

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AG

40S ribosomal protein S6

Chain CW

60S ribosomal protein L24