IL_4V6X_324

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_324 not in the Motif Atlas

Homologous match to IL_8P9A_417

Geometric discrepancy: 0.2678

The information below is about IL_8P9A_417

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

4V6X|1|B2|A|922
4V6X|1|B2|G|923
*
4V6X|1|B2|C|1019
4V6X|1|B2|A|1020
4V6X|1|B2|U|1021
4V6X|1|B2|U|1022

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AN

40S ribosomal protein S13

Chain AW

40S ribosomal protein S15a

Chain Ab

40S ribosomal protein S27