IL_4V6Y_097

3D structure

PDB id

4V6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1a)

Experimental method

ELECTRON MICROSCOPY

Resolution

12 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

4V6Y|1|BA|C|995

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6Y_097 not in the Motif Atlas

Homologous match to IL_7RQB_035

Geometric discrepancy: 0.4973

The information below is about IL_7RQB_035

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.12

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

4V6Y|1|BA|C|994
4V6Y|1|BA|C|995
4V6Y|1|BA|A|996
*
4V6Y|1|BA|U|1159
4V6Y|1|BA|G|1160

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BJ

50S ribosomal protein L9

Chain BQ

50S ribosomal protein L18

Chain BR

50S ribosomal protein L19

Chain BZ

50S ribosomal protein L28