IL_4V6Y_168

3D structure

PDB id

4V6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1a)

Experimental method

ELECTRON MICROSCOPY

Resolution

12 Å

Loop

Sequence

GAUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

4V6Y|1|BA|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6Y_168 not in the Motif Atlas

Homologous match to IL_4WF9_104

Geometric discrepancy: 0.1645

The information below is about IL_4WF9_104

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V6Y|1|BA|G|2737
4V6Y|1|BA|A|2738
4V6Y|1|BA|U|2739
4V6Y|1|BA|A|2740
4V6Y|1|BA|A|2741
4V6Y|1|BA|G|2742
*
4V6Y|1|BA|C|2762
4V6Y|1|BA|G|2763
4V6Y|1|BA|A|2764
4V6Y|1|BA|A|2765
4V6Y|1|BA|A|2766
4V6Y|1|BA|C|2767

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L34

Chain BG

50S ribosomal protein L4

Chain BJ

50S ribosomal protein L9