IL_4V6Y_179

3D structure

PDB id

4V6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1a)

Experimental method

ELECTRON MICROSCOPY

Resolution

12 Å

Loop

Sequence

CCG*UGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6Y_179 not in the Motif Atlas

Geometric match to IL_5E81_401

Geometric discrepancy: 0.2328

The information below is about IL_5E81_401

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

4V6Y|1|AA|C|613
4V6Y|1|AA|C|614
4V6Y|1|AA|G|615
*
4V6Y|1|AA|U|625
4V6Y|1|AA|G|626
4V6Y|1|AA|G|627

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AP

30S ribosomal protein S16