IL_4V6Z_073

3D structure

PDB id

4V6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1b)

Experimental method

ELECTRON MICROSCOPY

Resolution

12 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

4V6Z|1|BA|A|504, 4V6Z|1|BA|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6Z_073 not in the Motif Atlas

Homologous match to IL_4WF9_015

Geometric discrepancy: 0.1781

The information below is about IL_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

4V6Z|1|BA|G|481
4V6Z|1|BA|A|482
4V6Z|1|BA|A|483
4V6Z|1|BA|C|484
*
4V6Z|1|BA|G|496
4V6Z|1|BA|A|497
4V6Z|1|BA|G|498
4V6Z|1|BA|U|499
4V6Z|1|BA|G|500
4V6Z|1|BA|A|501
4V6Z|1|BA|A|502
4V6Z|1|BA|A|503
4V6Z|1|BA|A|504
4V6Z|1|BA|A|505
4V6Z|1|BA|G|506
4V6Z|1|BA|A|507
4V6Z|1|BA|A|508
4V6Z|1|BA|C|509

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BS

50S ribosomal protein L22

Chain BU

50S ribosomal protein L24