IL_4V6Z_130

3D structure

PDB id

4V6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1b)

Experimental method

ELECTRON MICROSCOPY

Resolution

12 Å

Loop

Sequence

CCGG*CG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6Z_130 not in the Motif Atlas

Homologous match to IL_5J7L_314

Geometric discrepancy: 0.2117

The information below is about IL_5J7L_314

Detailed Annotation

Major groove outside cWW, minor groove, intercalation pocket

Broad Annotation

Major groove outside cWW, minor groove, intercalation pocket

Motif group

IL_88739.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

4V6Z|1|BA|C|1837
4V6Z|1|BA|C|1838
4V6Z|1|BA|G|1839
4V6Z|1|BA|G|1840
*
4V6Z|1|BA|C|1902
4V6Z|1|BA|G|1903

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BC

50S ribosomal protein L2