IL_4V6Z_166

3D structure

PDB id

4V6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1b)

Experimental method

ELECTRON MICROSCOPY

Resolution

12 Å

Loop

Sequence

GG*UAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6Z_166 not in the Motif Atlas

Homologous match to IL_4WF9_106

Geometric discrepancy: 0.2286

The information below is about IL_4WF9_106

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_92880.1

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

4V6Z|1|BA|G|2838
4V6Z|1|BA|G|2839
*
4V6Z|1|BA|U|2878
4V6Z|1|BA|A|2879
4V6Z|1|BA|C|2880

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BN

50S ribosomal protein L17